Don't worry about any references to tags. This isn't your problem. Ditto the IOT > finisher connection. It sounds like you have everything properly connected between the IOT and finisher. The finisher butts to the processor and there are two levers in the front to the left that cam down and lock the two pieces together. There is no interlock there. If the finisher is leveled to the two locator pins on the processor, then the finisher should just roll up against the IOT and dock. You don't have to worry about this until you are ready to feed paper.
There are two parts to the interlock circuit, a 24V component and a 5V. Both have to be present. This CAN be a pain in the butt, broken wires, etc, but in your case, if the machine was working at LSU, then it is going to be something simple.
I would look carefully at all the interlock switches, there is one behind the fuser, at the back of the machine, below the fan. Also check the relays on the back of the LVPS and on the folddown panel below the LVPS. Check the fault list in diagnostics (SCP) for any other fault codes. The attached wiring diagram should help.
If you have other fault codes, let us know what they are.
As I remember the interlock sense circuit goes through a relay (K104??) on the back of the LVPS. The dust covers can be removed and the contacts cleaned with a thin strip of card stock. It seems like there was also a switch on the back of the document handler, to the right standing at the back of the machine. Take the back cover of the handler off, raise and lower the handler, and you'll see it actuated. I haven't worked on 5090's in ten years, someone else can probably give you better advice at this point.
There are two diagnostic bypass switches, one on the processor and one on the finisher, covered by hinged caps, at the top. You'll see them if you look for them.